STAB2043 Molecular Approaches in Conservation


Course Contents
TopicLecturer
1. Genetic diversity
- Sources of genetics variation
Prof. Wicki

2. Sampling strategy
- Types of tissues, pre-handling of samples, protein extraction, DNA extraction
Prof. Wicki
3. Protein extraction
Isozymes - enzyme systems, electrophoretic methods (PAGE, CAE, starch gel). Estimation of population genetic parameters viz. allele frequency, heterozygosity, inbreeding coefficient.

Practical 1 - Isozyme analysis
Prof. Wicki




4. DNA extraction
- Sources of DNA (nuclear DNA, chloroplast DNA, mitochondrial DNA), characteristics of genome
Prof. Wicki

Mid-Semester Assessment: 30%

5. DNA polymorphism I
Non-PCR based techniques using restriction enzymes and DNA probes e.g. RFLP Note I Note II
Practical 2 - RFLP analysis
Dr. Choong



6. DNA polymorphism II Note I Note II Note III
PCR based techniques using partially specific primers e.g. RADP, AFLP
Practical 3 - RAPD analysis
Dr. Choong



7. DNA polymorphism III Note I Note II
PCR based techniques using specific primers e.g. CAPS, SSR
Dr. Choong


8. Molecular data analysis
- genetic distance, genetic diversity within and among populations or species, mating system
Prof. Wicki


9. Applications of molecular markers in in situ and ex situ conservationProf. Wicki

Practicals 1, 2 and 3: 15%
Final Examination: 55%