Sains Malaysiana 51(1)(2022): 39-50

http://doi.org/10.17576/jsm-2022-5101-04

 

Population Structure of Indian Mackerel (Rastrelliger kanagurta) in Java and Bali Island, Indonesia Inferred from Otolith Shape

(Struktur Populasi Ikan Borek India (Rastrelliger kanagurta) di Jawa dan Kepulauan Bali, Indonesia diperoleh daripada Bentuk Otolit)

 

ARIEF WUJDI1,2*, HAN JU KIM3 & CHUL WOONG OH3

 

1International Graduate Program of Fisheries Science, Pukyong National University, Busan, 48513 South Korea

 

2Research Institute for Tuna Fisheries, Denpasar, Bali, 80223 Indonesia

 

3Department of Marine Biology, Pukyong National University, Busan, 48513 South Korea

 

Diserahkan: 12 Januari 2021/Diterima: 16 Mei 2021

 

ABSTRACT

The Indian mackerel, Rastrelliger kanagurta, is a commercially important resource across Indonesia's archipelagic waters. Despite its essential role in the fisheries industry, information regarding its population structures for management purposes is still limited. The present study investigates the variability of otolith shape as an efficient tool for stock discrimination. A total of 159 pairs of sagittal otolith were sampled at four localities along the southern Java-Bali coastal waters. Otolith outline was modeled by using Wavelet coefficients and was compared between localities using ANOVA-like permutation test, Canonical Analysis of Principal Coordinates (CAP), and classification test performed using linear discriminant analysis. The results showed significant differences in the shape of otolith between populations, reflected explicitly in the morphological feature of the excisura major. The differences in otolith shape were examined from all localities (ANOVA-like, p<0.001, and CAP p>0.05), except those otoliths between Palabuhanratu and Pacitan, thus, a mixed stock may occur in these two locations. These findings were also confirmed by the low classification success rate using LDA 44.26%. These results suggested that at least two distinct stocks potentially contributed to the fishery, impacting species management and conservation.

 

Keywords: Otolith morphology; Rastrelliger kanagurta; shapeR; stock identification; Wavelet transformation

 

ABSTRAK

Ikan borek India, Rastrelliger kanagurta, adalah sumber ikan komersial yang penting di seluruh perairan kepulauan Indonesia. Walaupun mempunyai kepentingan ekonomi yang tinggi dalam industri perikanan, maklumat struktur populasinya untuk tujuan pengurusan masih terhad. Penyelidikan ini mengkaji kebolehubahan bentuk otolit sebagai kaedah yang cekap untuk menilai struktur stok ikan. Sebanyak 159 pasang sagital otolit diambil dari empat kawasan di sepanjang perairan pantai selatan Jawa dan Bali. Garis besar otolit dimodelkan menggunakan pekali Wavelet dan dibandingkan antara lokasi dengan ujian ANOVA dengan permutasi, Analisis Kanonikal Koordinat Utama (CAP) dan pengelompokan dilakukan dengan menggunakan analisis diskriminan linear. Hasil kajian menunjukkan bahawa terdapat perbezaan yang signifikan dalam bentuk otolith antara populasi, terutama dalam pencirian morfologi pada bahagian eksikura major. Perbezaan signifikan diperoleh untuk bentuk otolit dari semua kawasan (ANOVA p<0.001 dan CAP p>0.05), kecuali otolit antara Palabuhanratu dan Pacitan. Ini mungkin disebabkan oleh terdapat stok campuran yang berlaku di kawasan tersebut. Penemuan ini juga disahkan oleh kadar kejayaan pengelasan yang rendah menggunakan LDA 44.26%. Hasil ini menunjukkan bahawa sekurang-kurangnya dua stok berbeza berpotensi menyumbang kepada perikanan yang dapat memberi implikasi kepada pengurusan dan pemuliharaan spesies ikan ini.

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Kata kunci: BentukR; morfologi otolit; pengenalpastian stok; penjelmaan Wavelet; Rastrelliger kanagurta

 

RUJUKAN

Amri, K., Suman, A., Irianto, H.E. & Wudianto. 2015. Effects of dipole mode and el-nino events on catches of yellowfin tuna (Thunnus albacares) in the eastern Indian Ocean off west Java. Indonesian Fisheries Research Journal 21(2): 75-90.

Anderson, M.J. & Willis, T.J. 2003. Canonical analysis of principal coordinates: A useful method of constrained ordination for ecology. Ecology 84(2): 511-525.

Arrafi, M., Azmi, A.M., Piah, R.M. & Muchlisin, Z.A. 2016. Biology of Indian mackerel, Rastrelliger kanagurta (Cuvier, 1817) in the western waters of Aceh. Iranian Journal of Fisheries Science 15(3): 957-972.

Bani, A., Poursaeid, S. & Tuset, V.M. 2013. Comparative morphology of the sagittal otolith in three species of south Caspian gobies. Journal of Fish Biology 82(4): 1321-1332.

Barton, D.P., Taillebois, L., Taylor, J., Crook, D.A., Saunders, T., Hearnden, M., Greig, A., Welch, D.J., Newman, S.J., Travers, M.J., Saunders, R.J., Errity, C., Maher, S., Dudgeon, C. & Ovenden, J. 2018. Stock structure of Lethrinus laticaudis (Lethrinidae) across northern Australia determined using genetics, otolith microchemistry and parasite assemblage composition. Marine and Freshwater Research 69(4): 487-501.

Brophy, D., Haynes, P., Arrizabalaga, H., Fraile, I., Fromentin, J.M., Garibaldi, F., Katavic, I., Tinti, F., Karakulak, F.S., Macias, D., Busawon, D., Hanke, A., Kimoto, A., Sakai, O., Deguara, S., Abid, N. & Santos, M.N. 2016. Otolith shape variation provides a marker of stock origin for north Atlantic bluefin tuna (Thunnus thynnus). Marine and Freshwater Research 67(7): 1023-1036.

Campana, S.E. 1999. Chemistry and composition of fish otoliths: Pathways, mechanisms and applications. Marine Ecology Progress Series 188: 263-297.

Campana, S.E. & Casselman, J.M. 1993. Stock discrimination using otolith shape analysis. Canadian Journal of Fisheries and Aquatic Sciences 50(5): 1062-1083.

Campana, S.E. & Neilson, J.D. 1985. Microstructure of fish otoliths. Canadian Journal of Fisheries and Aquatic Sciences 42(5): 1014-1032.

Cardinale, M., Doering-Arjes, P., Kastowsky, M. & Mosegaard, H. 2004. Effects of
sex, stock, and environment on the shape of known-age Atlantic cod (Gadus morhua) otoliths. Canadian Journal of Fisheries and Aquatic Sciences 61(2): 158-167.

Christensen, H.T., Riget, F., Backe, M.B., Saha, A., Johansen, T. & Hedeholm, R.B. 2018. Comparison of three methods for identification of redfish (Sebastes mentella and S. norvegicus) from the Greenland east coast. Fisheries Research 201(1): 11-17.

Collette, B.B. & Nauen, C.E. 1983. FAO Species Catalogue Vol. 2 Scombrids of the World: An Annotated and Illustrated Catalogue of Tunas, Mackerels, Bonitos and Related Species Know to Date. FAO Fisheries Synopsis 2 (125). Rome: FAO.

Das, I., Hazra, S., Bhattacharya, S., Das, S. & Giri, S. 2016. A study on seasonal change in feeding habit, health status and reproductive biology of Indian Mackerel (Rastrelliger kanagurta, Cuvier) in coastal water of West Bengal. Indian Journal of Geo-Marine Sciences 45 (2): 254-260.

Directorate General of Capture Fisheries. 2017. Statistic Data of Capture Fisheries. Jakarta: Directorate General of Capture Fisheries, Ministry of Marine Affair and Fisheries.

Gencay, R., Selcuk, F. &Whitcher, B. 2001. Differentiating intraday seasonalities through wavelet multi-scaling. Physica A 289(3-4): 543-556.

Hariati, T. & Fauzi, M. 2011. Reproductive aspects of Indian mackerel Rastrelliger kanagurta (Cuv. 1817) of northern Aceh waters. Jurnal Iktiologi Indonesia 11(1): 47-53 (In Bahasa Indonesia).

Hendiarti, N., Suwarso, Aldrian, E., Amri, K., Andiastuti, R., Sachoemar, S. & Wahyono, I.B. 2005. Seasonal variation of pelagic fish catch around Java. Oceanography 18(4): 112-123.

Hendiarti, N., Siegel, H. & Ohde, T. 2004. Investigation of different coastal processes in Indonesian water using SeaWiFS data. Deep Sea Research Part II: Topical Studies in Oceanography 51(1-3): 85-97.

Hulkoti, S.H., Shivaprakash, S.M., Anjanayappa, H.N., Somashekara, S.R., Benakappa, S., Naik, A.S.K., Prasad, L.G. & Kumar, J. 2013. Food and feeding habits of mackerel Rastrelling kanagurta (Cuvier) from Mangalore Region. Environment and Ecology 31 (2A): 672-675.

Hüssy, K., Mosegaard, H., Albertsen, C.M., Nielsen, E.E., Hansen, J.H. & Eero, M.
2016. Evaluation of otolith shape as a tool for stock discrimination in marine fishes using Baltic Sea cod as a case study. Fisheries Research 174: 210-218.

Ilahude, A.G. 1975. Seasonal features of the hydrology of the Bali Strait. Marine Research of Indonesia 15: 37-73.

Kishida, M., Kanaji, Y., Xie, S., Watanabe, Y., Kawamura, T., Masuda, R. & Yamashita Y. 2011. Ecomorphological dimorphism of juvenile Trachurus japonicus in Wakasa Bay, Japan. Environmental Biology of Fishes 90(3): 301-315.

Kunarso, Hadi, S., Ningsih, N.S. & Baskoro, M.S. 2012. Variability of temperature and chlorophyll-a in upwelling areas at various ENSO and IOD occurrence in the waters of south Java to Timor. Ilmu Kelautan - Indonesian Journal of Marine Science 16(3): 171-180 (In Bahasa Indonesia).

Kuswardani, R.T.D. & Qiao, F. 2014. Influence of the Indonesian throughflow on the upwelling off the east coast of South Java. Chinese Science Bulletin 59(33): 4516-4523.

Libungan, L.A. & Palsson, S. 2015a. ShapeR: Collection and analysis of otolith shape data. R package version 0.1-5. https://CRAN.R-project.org/package=shapeR.

Libungan, L.A. & Palsson, S. 2015b. ShapeR: An R package to study otolith shape variation among fish populations. PLoS ONE 10(3): e0121102.

Libungan, L.A., Oskarsson, G.J., Slotte, A., Jacobsen, J.A. & Palsson, S. 2015. Otolith shape: A population marker for Atlantic herring Clupea harengus. Journal of Fish Biology 86(4): 1377-1395.

Lleonart, J., Salat, J. & Torres, G.J. 2000. Removing allometric effects of body size in morphological analysis. Journal of Theoretical Biology 205(1): 85-93.

Lombarte, A., Palmer, M., Matallanas, J., Gómez-Zurita, J. & Morales-Nin, B. 2010. Ecomorphological trends and phylogenetic inertia of otolith sagittae in Nototheniidae. Environmental Biology of Fishes 89(3-4): 607-618.

Longmore, C., Fogarty, K., Neat, F., Brophy, D., Trueman, C., Milton, A. & Mariani, S. 2010. A comparison of otolith microchemistry and otolith shape analysis for the study of spatial variation in a deep-sea teleost, Coryphaenoides rupestris. Environmental Biology of Fishes 89(3-4): 591-605.

Marini, M., Suman, A., Farajallah, A. & Wardiatno, Y. 2017. Identifying Penaeus merguiensis de man, 1888 stocks in Indonesian fisheries management area 573: A truss network analysis approach. AACL Bioflux 10(4): 922-935.

Moore, B.R., Lestari, P., Cutmore, S.C., Proctor, C. & Lester, R.J.G. 2019. Movement of juvenile tuna deduced from parasite data. ICES Journal of Marine Science 76(6): 1-12.

Moreira, C., Froufe, E., Vaz-Pires, P. & Correia, A.T. 2019. Otolith shape analysis as a tool to infer the population structure of the blue jack mackerel, Trachurus picturatus, in the NE Atlantic. Fisheries Research 209: 40-48.

Muto, N., Alama, U.B., Hata, H., Guzman, A.M.T., Cruz, R., Gaje, A., Traifalgar, R.F.M., Kakioka, R., Takeshima, H., Motomura, H., Muto, F., Babaran, R.P. & Ishikawa, S. 2016. Genetic and morphological differences among the three species of the genus Rastrelliger (Perciformes: Scombridae). Ichthyological Research 63(2): 275-287.

Nason, G. 2012. Wavethresh: Wavelets statistics and transforms, version 4.5. R package. http://CRAN.R-project.org/package=wavethresh.

Nurdin, S., Mustapha, M.A., Lihan, T. & Ghaffar, M.A. 2015. Determination of potential fishing grounds of Rastrelliger kanagurta using satellite remote sensing and GIS technique. Sains Malaysiana 44(2): 225-232.

Oksanen, J., Blanchet, F.G., Kindt, R., Legendre, P., Minchin, P.R., O'Hara, R.B., Simpson, G.L., Solymos, P., Stevens, M.H.H. & Wagner, H. 2013. Vegan: Community Ecology Package, Version 2.0-7. R Package. http://CRAN.R-project.org/ package=vegan/.

Oktaviani, D., Supriatna, J., Erdmann, M. & Abinawanto, A. 2014. Maturity stages of Indian mackerel Rastrelliger kanagurta (Cuvier, 1817) in Mayalibit Bay, Raja Ampat, West Papua. International Journal of Aquatic Science 5(1): 67-76.

Parisi-Baradad, V., Lombarte, A., Garcia-Ladona, E., Cabestany, J., Piera, J. & Chic, O. 2005. Otolith shape contour analysis using affine transformation invariant wavelet transforms and curvature scale space representation. Marine and Freshwater Research 56(5): 795-804.

Peng, S., Qian, Y.K., Lumpkin, R., Du, Y., Wang, D. & Li, P. 2014. Characteristics of the near-surface currents in the Indian Ocean as deduced from satellite-tracked surface drifters. Part I: Pseudo-eulerian statistics. Journal of Physical Oceanography 45(2): 441-458.

Peters, A. & Hothorn, T. 2015. Ipred: Improve predictors. R package version 0.9-5. https://cran.r-project.org/package=ipred.

R Core Team. 2016. R: A language and environment for statistical computing. R Foundation for Statistical Computing. Vienna, Austria. Version 3.3.3. https://www.r-project.org/.

Reichenbacher, B., Feulner, G.R. & Schulz-Mirbach, T. 2009. Geographic variation in otolith morphology among freshwater populations of Aphanius dispar (Teleostei, Cyprinodontiformes) from the southeastern Arabian Peninsula. Journal of Morphology 270(4): 469-484.

Research Institute of Marine Research. 2014. Potency and Utilization Level of Fish Resources in the Fisheries Management Areas of the Republic of Indonesia (WPP RI). Jakarta: Ref Graphika.

Ripley, B., Venables, B., Bates, D.M., Hornik, K., Gebhardt, A. & Firth, D. 2014. MASS: Support Functions and Datasets for Venables and Ripley's MASS (4th edition, 2002), Version 7.3-35. https://cran.r-project.org/package=MASS.

Sadighzadeh, Z., Otero-Ferrer, J.L., Lombarte, A., Fatemi, M.R. & Tuset, V.M. 2014b. An approach to unraveling the coexistence of snappers (Lutjanidae) using otolith morphology. Scientia Marina 78(3): 353-362.

Sadighzadeh, Z., Valinassab, T., Vosugi, G., Motallebi, A.A., Fatemi, M.R., Lombarte, A. & Tuset, V.M. 2014a. Use of otolith shape for stock identification of John's snapper, Lutjanus johnii (Pisces: Lutjanidae), from the Persian Gulf and the Oman Sea. Fisheries Research 155: 59-63.

Sartimbul, A., Nakata, H., Rohadi, E., Yusuf, B. & Kadarisman, H.P. 2010. Variations in chlorophyll-a concentration and the impact on Sardinella lemuru catches in Bali Strait, Indonesia. Progress in Oceanography 87(1-4): 168-174.

Schneider, C.A., Rasband, W.S. & Eliceiri, K.W. 2012. NIH Image to ImageJ: 25 years of image analysis. Nature Methods 9(7): 671-675.

Secor, D.H., Dean, J.M. & Laban, E.H. 1992. Otolith removal and preparation for microchemical examination. In Otolith Microstructure Examination and Analysis - Canadian Special Publication of Fisheries and Aquatic 117, edited by Stevenson, D.K. & Campana, S.E. Ottawa: Department of Fisheries & Oceans. pp. 19-57.

Smale, M.J., Watson, G. & Hecht, T. 1995. Otolith Atlas of Southern African Marine Fishes. Grahamstown: J.L.B. Smith Institute of Ichthyology.

Turan, C. 2006. The use of otolith shape and chemistry to determine stock structure of Mediterranean horse mackerel Trachurus mediterraneus (Steindachner). Journal of Fish Biology 69: 165-180.

Tuset, V.M., Jurado-Ruzafa, A., Otero-Ferrer, J.L. & Santamaria, M.T.G. 2019. Otolith phenotypic variability of the blue jack mackerel, Trachurus picturatus, from the Canary Islands (NE Atlantic): Implications in its population dynamic. Fisheries Research 218: 48-58.

Tuset, V.M., Otero-Ferrer, J.L., Gomez-Zurita, J., Venerus, L.A., Stransky, C., Imondi,
R., Orlov, A.M., Ye, Z., Santschi, L., Afanasiev, P.K., Zhuang, L., Farre´, M.,
Love, M. & Lombarte, A. 2016. Otolith shape lends support to the sensory
drive hypothesis in rockfishes. Journal of Evolutionary Biology 29(10): 2083-2097.

Tuset, V.M., Lombarte, A. & Assis, C.A. 2008. Otolith atlas for the western Mediterranean, north and central eastern Atlantic. Scientia Marina 72(S1): 7-198.

Vasconcelos, J., Vieira, A.R., Sequeira, V., Gonzalez, J.A., Kaufmann, M. & Gordo, L.S. 2018. Identifying populations of the blue jack mackerel (Trachurus picturatus) in the Northeast Atlantic by using geometric morphometrics and otolith shape analysis. Fishery Bulletin 116(1): 81-92.

Vignon, M. & Morat, F. 2010. Environmental and genetic determinant of otolith shape revealed by a non-indigenous tropical fish. Marine Ecology Progress Series 411: 231-241.

Volpedo, A.V. & Fuchs, D.V. 2010. Ecomorphological patterns of the lapilli of Paranoplatense Siluriforms (South America). Fisheries Research 102: 160-165.

Volpedo, A.V., Tombari, A.D. & Echeverría, D.D. 2008. Eco-morphological patterns of the sagitta of Antarctic fish. Polar Biology 31(5): 635-640.

Warnes, G.R., Bolker, B., Bonebakker, L., Gentleman, R., Liaw, W.H.A., Lumley, T., Maechler, M., Magnusson, A., Moeller, S. & Schwartz, M. 2015. gplots: Various R programming tools for plotting data. R package version 2.17. 0. http://cran.r-project.org/package=gplots.

White, W.T., Last, P.R., Dharmadi, Faizah, R., Chodrijah, U., Prisantoso, B.I., Pogonoski, J.J., Puckridge, M. & Blaber, S.J.M. 2013. Market Fishes of Indonesia (Jenis-jenis Ikan di Indonesia). ACIAR Monograph No. 155. Canberra, Australia: Australian Centre for International Agricultural Research (ACIAR).

Wujdi, A., Setyadji, B. & Nugroho, S.C. 2017. Stock structure identification of skipjack tuna (Katsuwonus pelamis Linnaeus, 1758) in Indian Ocean (Indonesian territory of FMA 573) using otolith shape analysis. Jurnal Penelitian Perikanan Indonesia 23(2): 77-88 (in Bahasa Indonesia).

Zamroni, A., Suwarso & Kuswoyo, A. 2017. Genetic variation of Indian mackerel, Rastrelliger kanagurta (Cuvier, 1817) in the waters of eastern Indonesia. Bawal Widya Perikanan Tangkap 9(2): 123-131.

Zamroni, A., Suwarso & Mardlijah, S. 2016. Populations genetic of Indian mackerel (Rastrelliger kanagurta Cuvier, 1817) in west Sumatera, Malacca Strait, and South China Sea. Jurnal Penelitian Perikanan Indonesia 22(1): 1-8.

 

*Pengarang untuk surat-menyurat; email: ariefwujdi@kkp.go.id

 

 

   

 

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