Institut Biologi Sistem

 Institute of Systems Biology

Workshop Outline

This workshop will focus on the introduction to proteomics analysis through theory and hands-on.

Who should attend

Postgraduate students (Master and PhD students), Post Doctorate, Academicians and Researchers (Government and non-government institution)

Fees

Local

International

Individual

RM 1,400

RM 1,500

Group of 3

RM 1,200

RM 1,300

List of Speakers and Trainers

  • Associate. Prof. Dr. Maizom Hassan obtained her Bachelor (1999), Masters (2004) and Ph.D. Degrees (2008) in Bioresources Science from the University of Tottori, Japan. After completing her studies, she was appointed as a Research Fellow/Senior Lecturer at the Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia (UKM). Her current research focuses on the development of biorational insecticide for oil palm pest management by using integrated systems biology, enzymology and entomology approaches. Her research interests were manifested in 4 patents, 3 book, 1 book-chapter and 45 publications which include 39 publications in high-impact journals such as Pesticide Biochemistry and Physiology, Plant Physiology and Biochemistry, Insects, Insect Molecular Biology, Genes and PloS ONE. Her publications attracted 385 citations with h-index of 11. Expressions of interest in joining the research collaboration and activity with Associate Prof. Dr. Maizom’s lab are always welcome. Please contact her via e-mail (maizom@ukm.edu.my) for further discussion.

  • Dr. Hamizah Shahirah Hamezah's research group has a great interest in understanding the mechanisms of learning and memory, as well as interventions for the cognitive decline during aging and neurodegenerative diseases. They focus on finding possible biomarkers leading to the cognitive decline in brain aging and neurodegenerative diseases by using the state-of-art omics approaches, brain imaging, and cognitive neurosciences. They are interested in finding possible therapeutics for the treatment of neurodegenerative diseases by investigating the effect of natural compounds on transgenic animal models. If you are interested in collaborating with her, please email her at hamizahshahirah@ukm.edu.my.

  • Dr. Ahmad Faris bin Seman @ Kamarulzaman is a senior lecturer at the Faculty of Applied Sciences, Universiti Teknologi MARA (UiTM) Pahang. He holds a PhD in Systems Biology from the Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia (UKM), where his research focused on integrating transcriptomic and proteomic data to uncover molecular targets for pest control in Rhynchophorus ferrugineus. He also holds a Master’s degree in Systems Biology and a Bachelor’s degree in Plant Biotechnology.

  • With a strong foundation in proteomics, transcriptomics, and computational biology, Dr. Faris brings years of hands-on experience in omics-driven research. His passion lies in making complex data analysis more approachable and applicable, especially for researchers and students venturing into bioinformatics and molecular biology.

  • He is one of the contributing authors of the Introduction to Proteomics Analysis Workshop Practical Handbook and has developed a copyrighted module on managing technical and biological replicates in proteomics using Perseus. His teaching approach focuses on bridging theory with real-world application, offering practical skills that can be immediately applied in research.

  • Dr. Faris believes that proteomics holds the key to answering many unanswered biological questions, and he hopes to empower more researchers to harness its potential. He can be reached at afkamarulzaman@uitm.edu.my.

Programme

28th October 2025 (Tuesday)

Time Activity Trainer Venue
8.30 am Registration Foyer
9.00 am Opening ceremony and introduction Assoc. Prof. Dr. Maizom Hassan Seminar Hall
9.05 am Lecture 1: Introduction to Proteomics-Part 1

  • What is proteomics?
  • Gel-based & non gel-based proteomics
  • Protein extraction
  • Protein measurement
  • Protein visualization
Assoc. Prof. Dr. Maizom Hassan Seminar Hall
10.30 am Coffee break - Foyer
11.00 am Practical 1:

  • Protein extraction

Note: Patent application number PI2025001486

Assoc. Prof. Dr. Maizom Hassan
Dr. Hamizah Shahirah
Dr. Ahmad Faris
AJK kursus latihan
Proteomics Lab
1.00 pm Lunch break - Foyer
2.00 pm Practical 1 (continue):

  • Protein measurement
  • SDS-PAGE electrophoresis
  • Protein visualization

Note: Patent application number PI2025001486

Assoc. Prof. Dr. Maizom Hassan
Dr. Hamizah Shahirah
Dr. Ahmad Faris
AJK kursus latihan
Proteomics Lab
5.00 pm Tea break & END OF DAY 1 Foyer

29th October 2025 (Wednesday)

Time Activity Trainer Venue
9.00 am Opening ceremony and introduction Dr. Hamizah Shahirah Seminar Hall
9.05 am Lecture 2: Introduction to Proteomics-Part 3

  • Mass spectrometry analysis in proteomics
Dr. Hamizah Shahirah Seminar Hall
10.30 am Coffee break - Foyer
11.00 am Practical 2:

  • In-gel digestion tutorial and quality checking
Assoc. Prof. Dr. Maizom Hassan
Dr. Hamizah Shahirah
Dr. Ahmad Faris
AJK kursus latihan
Proteomics Lab
1.00 pm Lunch break - Foyer
2.00 pm Practical 3:

  • LC-MS-TOF demonstration
Assoc. Prof. Dr. Maizom Hassan
Dr. Hamizah Shahirah
Dr. Ahmad Faris
AJK kursus latihan
Chemical Analysis Lab
3.00 pm Lecture 3: Introduction to Proteomics-Part 4

  • Understanding mass spectra
Dr. Hamizah Shahirah Seminar Hall
5.00 pm Tea break & END OF DAY 2  

30th October 2025 (Thursday)

Time Activity Trainer Venue
9.00 am Opening ceremony and introduction Dr. Hamizah Shahirah Seminar Hall
9.05 am Lecture 4:

  • Introduction to MaxQuant for proteomics data analysis
Dr. Hamizah Shahirah Seminar Hall
10.30 am Coffee break - Foyer
11.00 am Practical 4:

  • MaxQuant for proteomics data analysis
Assoc. Prof. Dr. Maizom Hassan
Dr. Hamizah Shahirah
Dr. Ahmad Faris
AJK kursus latihan
Seminar Hall
1.00 pm Lunch break - Foyer
2.00 pm Lecture 5:

  • Introduction to Perseus for proteomics data analysis 
Dr. Ahmad Faris Seminar Hall
3.00 pm Practical 5:

  • Perseus for statistical analysis of proteomics data,  Part 1
Dr. Ahmad Faris Seminar Hall
5.00 pm Tea break & END OF DAY 3  

31st October 2025 (Friday)

Time Activity Trainer Venue
9.00 am Opening ceremony and introduction Dr. Hamizah Shahirah Seminar Hall
9.05 am Practical 6:

  • Perseus for statistical analysis of proteomics data,  Part 2

Note: Copyright CRLY2024W05774

Dr. Ahmad Faris Seminar Hall
10.30 am Coffee break - Foyer
11.00 am Practical 6 (continue):

  • Perseus for statistical analysis of proteomics data,  Part 2

Note: Copyright CRLY2024W05774

Assoc. Prof. Dr. Maizom Hassan
Dr. Hamizah Shahirah
Dr. Ahmad Faris
AJK kursus latihan
Seminar Hall
12.15 pm Lunch break - Foyer
3.00 pm Closing ceremony

  • Closing speech by Director of INBIOSIS
  • Certificate giving ceremony
  • Photography session
All Seminar Hall
4.00 pm Tea break & END OF Workshop  

Centre of Omics Data Analysis (CODA)

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